I'll second
https://onestopjoeshop.com/ for JOE specifically.
Still Ebay when I give up and need something really specific.
But it has gotten really pricey.
If you're working with 25th-50th style, these can also be helpful:
https://vitruvianarmory.com/ is great for buying Bossfight parts piece by piece, and they're starting to carry some of the other independent figure lines.
https://www.marauderinc.com/, of course.
https://www.bricklink.com/v2/main.page I've started using some of the smaller LEGO bits to add or reinforce articulation on figures and connection points on vehicles.. You kind of have to know what you're looking for, but it's a handy site if you find that useful in your customizing.